Contributing

Thank you for the interest in contributing to the TU Cookbook initiative! We accept contributions in the following areas:

• Reporting a bug

• Discussing the current state of notebooks and code

• Submitting a fix

• Proposing new notebooks

• Proposing adaptations and new features to existing notebooks

Development on TU Wien GitLab¶

All development takes place on the TU Wien’s GitLab repository: https://gitlab.tuwien.ac.at/cookbooks. Here we track issues and feature/notebook requests.

Propose New Cookbooks¶

To propose new cookbooks contact ...

Propose Changes with Merge Requests to Existing Cookbooks¶

GitLab’s Merge Request (equivalent of GitHub’s Pull Request) are at the core of proposing new changes to the existing TU Cookbook collection. For a successful merge request check the following:

1. Make sure that you follow the instructions for development as outlined belows

2. Use the pre-commit hooks

3. Check whether the GitLab CI checks pass

Contribution License¶

Any contribution to an existing Cookbook will under the same license that covers the current Cookbook, ....

Report Bugs using GitLab Issues¶

We use GitLab to track public bugs. If you want to report a bug, please open a new issue on the relevant TU Cookbook on https://gitlab.tuwien.ac.at/cookbooks.

How to write issues¶

A bug should be reported with details, back and sample code as well as data. The goals is to create a minimal reproducible example. Ideally this should contain:

• A quick summary and/or background

• Steps to reproduce; minimal reproducible example

• What you expect to happen

• What actually happens

• Notes (e.g. possible workarounds and/or things you tried to solve the bug)

Reference¶

This section was adapted from this guideline.

Development¶

Environment¶

To be determined... (conda, uv, etc.)

Testing¶

To ensure that the cookbook webpage can be deployed and the notebooks run on the dataLAB JupyterHub follow the next steps.

1. Start Jupyter Lab from a Docker container:

   docker compose up

2. Copy Jupyter Lab URL to web browser. Run all notebooks once to check if you added all dependencies to the pyproject.toml and whether external data can be accessed.

If the following steps are completed successfully then one can stop and remove the container.

1. Stop Docker container with CTRL + C

2. Remove container:

   docker compose down

Code Quality¶

Why Code Quality Matters¶

As a public showcase of the university research, the code must:

• Teach by Example: Demonstrate best practices to readers

• Ensure FAIR Compliance: Clear, well-documented code supports Findable, Accessible, Interoperable and Reuseable data

• Establish Credibility High-quality code reflects the university’s technical excellence and aids reproducability

Enforcing Quality¶

We use automated tools to maintain standards. Follow these steps:

1. Install pre-commit hooks

Run this command to enable automatic checks on every commit:

uvx pre-commit install

2. Run Checks Manually

Use the uv toolrunner to execute tools:

# Format the code (ruff)
uvx ruff format

# Lint the code (ruff)
uvx ruff check  --fix

# Type check (ty)
uvx ty check

Key Tools¶

• Pre-Commit: Run the pre-commit hooks. Find out more at the pre-commit documentation

• Ruff: The Linter and Formatter. Can be configured in the pyproject.toml file. Find out more at the ruff documenation

• TY: The Typechecker. Can be configured in the pyproject.toml file. Find out more at the ty documenation

• UV: The package and project manager. Find out more at the uv documentation

Best Practices for Academic Code¶

• Type Hints: Annotate function arguments and returns as defined in PEP 484. This can help to find issues in your code early. A helpful cheatsheet is available here.

• Consistent Formatting: Function signatures and classes should have a uniform interface. Follow the PEP 8 guidelines.

• Pre-Commit Checks: To ensure properly formatted code.

• Documentation: Add Docstrings to public functions and classes. Follow the NumPy Docstring convention (there are tools for automated docstring documentation like this VSCode Extension).